Data Engineer

San Mateo, CA

Who we are

At PrognomiQ, we aim to develop and commercialize transformative tests for early detection and treatment of cancer and other complex diseases. To accomplish this, we are leveraging leading proteomics technology, including the Proteograph product suite from Seer Bio, in combination with other multi-omics assays to develop unprecedented molecular views of health and disease. We are a team of experienced and accomplished scientists supported by a group of leading investors in healthcare and technology.

Would you like to be at the leading edge of molecular data generation and analyses that changes how cancer and other complex diseases are detected and treated? Or are you looking to bring innovative and disruptive solutions to market? If you answer “yes” to either of these questions, let us know by applying!

Description of role

As a key member working cross-functionally across PrognomiQ’s teams, you’ll be integral to the success of our mission to develop highly accurate and cost-effective diagnostic tests.


  • Develop “last-mile” pipelines connecting readouts to/from different ‘omics and analytics platforms to core data warehouse solutions. This includes extract, transform, and load.

  • Develop software solutions connecting clinical metadata, physical sample tracking, and Laboratory Information Management Systems (LIMS).

  • Contribute reproducible, reusable, and robust code for data analyses and infrastructure pipelines.

  • Translate the needs of bench scientists (who may not have deep technical knowledge of software engineering) into module specifications and implementations thereof.

  • Build SQL dashboards to visualize aggregated data from clinical  and molecular databases.


  • B.S. or M.S. in bioinformatics, computer science, data science, or related discipline.

  • Proficiency in Python and SQL and experience in querying large databases.

  • Excellent communication skills and the willingness to work towards larger team goals.

Equal Opportunity Employment

PrognomiQ is an equal opportunity employer that celebrates diversity and inclusion in the workplace. We prohibit discrimination and harassment of any kind based on race, color, sex, religion, sexual orientation, national origin, disability, genetic information, pregnancy, or any other characteristic protected by law. This policy applies to all employment practices within our organization, including hiring, recruiting, promotion, termination, layoff, recall, leave of absence, compensation, benefits, training, and apprenticeship.